PH01000090G0310's details annotation
1.Annotation
ICBR annotation: transmembrane amino acid transporter protein, putative, expressed
Blast result AT1G08230 : 1.00E-115
Blast annotation: Transmembrane amino acid transporter family protein
2.Location
Scaffold: PH01000090
Strand: +
| Region | Start | End |
| gene | 175343 | 181735 |
| mRNA | 175343 | 181735 |
| exon | 175343 | 175829 |
| exon | 177524 | 177754 |
| exon | 178573 | 178735 |
| exon | 179145 | 179203 |
| exon | 179250 | 179347 |
| exon | 179451 | 179637 |
| exon | 179750 | 179880 |
| exon | 181042 | 181735 |
| CDS | 175721 | 175829 |
| CDS | 177524 | 177754 |
| CDS | 178573 | 178735 |
| CDS | 179145 | 179203 |
| CDS | 179250 | 179347 |
| CDS | 179451 | 179637 |
| CDS | 179750 | 179880 |
| CDS | 181042 | 181656 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01490.17 | Aa_trans | 36 | 117 |
| PF01490.17 | Aa_trans | 158 | 514 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.