PH01000090G0360's details annotation
1.Annotation
ICBR annotation: dehydrodolichyl diphosphate synthase, putative, expressed
Blast result AT5G58770 : 2.20E-51
Blast annotation: Undecaprenyl pyrophosphate synthetase family protein
2.Location
Scaffold: PH01000090
Strand: +
| Region | Start | End |
| gene | 201852 | 210384 |
| mRNA | 201852 | 210384 |
| exon | 201852 | 202241 |
| exon | 203107 | 203209 |
| exon | 203295 | 203373 |
| exon | 203536 | 203652 |
| exon | 204464 | 204561 |
| exon | 205070 | 205120 |
| exon | 205994 | 206044 |
| exon | 206678 | 206792 |
| exon | 207234 | 207323 |
| exon | 207410 | 207764 |
| exon | 208160 | 208199 |
| exon | 208271 | 208340 |
| exon | 208694 | 208812 |
| exon | 209490 | 209557 |
| exon | 209797 | 210384 |
| CDS | 202156 | 202241 |
| CDS | 203107 | 203209 |
| CDS | 203295 | 203373 |
| CDS | 203536 | 203652 |
| CDS | 204464 | 204561 |
| CDS | 205070 | 205120 |
| CDS | 205994 | 206044 |
| CDS | 206678 | 206792 |
| CDS | 207234 | 207323 |
| CDS | 207410 | 207764 |
| CDS | 208160 | 208199 |
| CDS | 208271 | 208340 |
| CDS | 208694 | 208812 |
| CDS | 209490 | 209557 |
| CDS | 209797 | 210247 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000121 | proton-transporting ATP synthase complex, catalytic core F(1), ATP synthesis coupled proton transport, Terpenoid_backbone_biosynthesis hydrogen ion transporting ATP synthase activity, rotational mechanism, transferase activity, transferring alkyl or aryl (other than methyl) groups, proton-transporting ATPase activity, rotational mechanism, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01255.18 | Prenyltransf | 459 | 626 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Terpenoid backbone biosynthesis | ditrans,polycis-polyprenyl diphosphate synthase [EC:2.5.1.-] | ko00900 | K11778 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.