PH01000090G0510's details annotation
1.Annotation
ICBR annotation: transmembrane amino acid transporter protein, putative, expressed
Blast result AT2G38120 : 0.00E+00
Blast annotation: Transmembrane amino acid transporter family protein
2.Location
Scaffold: PH01000090
Strand: -
| Region | Start | End |
| gene | 319750 | 326650 |
| mRNA | 319750 | 326650 |
| exon | 319750 | 320507 |
| exon | 321743 | 322208 |
| exon | 324005 | 324102 |
| exon | 324367 | 324550 |
| exon | 324676 | 324788 |
| exon | 325245 | 325430 |
| exon | 325574 | 326650 |
| CDS | 320274 | 320507 |
| CDS | 321743 | 322208 |
| CDS | 324005 | 324102 |
| CDS | 324367 | 324550 |
| CDS | 324676 | 324788 |
| CDS | 325245 | 325430 |
| CDS | 325574 | 325774 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000683 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM000890 | DNA-3-methyladenine glycosylase activity, base-excision repair, Plant_hormone_signal_transduction DNA repair, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01490.17 | Aa_trans | 52 | 445 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Plant hormone signal transduction | auxin influx carrier (AUX1 LAX family) | ko04075 | K13946 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.