Annotation of co-expression genes

PH01000092G0800's details annotation

1.Annotation

ICBR annotation: histidine kinase, putative, expressed

Blast result AT2G01830 : 7.00E-169
Blast annotation: CHASE domain containing histidine kinase protein

2.Location

Scaffold: PH01000092
Strand: +

RegionStartEnd
gene536116546822
mRNA536116546822
exon536116537918
exon538719538952
exon539074539243
exon539919540137
exon540211540397
exon540484540535
exon540617540846
exon541040541138
exon541505542005
exon542963543678
exon544002544484
exon544675544851
exon545791546822
CDS537655537918
CDS538719538952
CDS539074539243
CDS539919540137
CDS540211540397
CDS540484540535
CDS540617540846
CDS541040541138
CDS541505542005
CDS542963543678
CDS544002544484
CDS544675544851
CDS545791546064

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)Others

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03924.12CHASE85265
PF00512.24HisKA355420
PF02518.25HATPase_c737816
PF00072.23Response_reg9951113

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000155phosphorelay sensor kinase activity
GO:0000156phosphorelay response regulator activity
GO:0000160phosphorelay signal transduction system
GO:0004871signal transducer activity
GO:0005524ATP binding
GO:0006355regulation of transcription, DNA-dependent
GO:0007165signal transduction
GO:0016020membrane
GO:0016310phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.