PH01000092G1500's details annotation
1.Annotation
ICBR annotation: nuclear-pore anchor, putative, expressed
Blast result AT1G79280 : 4.00E-127
Blast annotation: nuclear pore anchor
2.Location
Scaffold: PH01000092
Strand: -
| Region | Start | End |
| gene | 1032150 | 1051134 |
| mRNA | 1032150 | 1051134 |
| exon | 1032150 | 1032429 |
| exon | 1032650 | 1032691 |
| exon | 1032766 | 1032945 |
| exon | 1033288 | 1033341 |
| exon | 1033416 | 1033457 |
| exon | 1036014 | 1036112 |
| exon | 1036186 | 1036320 |
| exon | 1036436 | 1036538 |
| exon | 1037357 | 1037430 |
| exon | 1037522 | 1037565 |
| exon | 1037723 | 1037801 |
| exon | 1037925 | 1038038 |
| exon | 1038160 | 1038264 |
| exon | 1038358 | 1038492 |
| exon | 1038927 | 1039007 |
| exon | 1039061 | 1039164 |
| exon | 1039324 | 1039372 |
| exon | 1041528 | 1041953 |
| exon | 1043288 | 1043380 |
| exon | 1043467 | 1043575 |
| exon | 1044021 | 1044163 |
| exon | 1044271 | 1044393 |
| exon | 1044444 | 1044533 |
| exon | 1045360 | 1045425 |
| exon | 1045501 | 1045593 |
| exon | 1045667 | 1045813 |
| exon | 1046013 | 1046111 |
| exon | 1050179 | 1050325 |
| exon | 1050411 | 1051134 |
| CDS | 1032319 | 1032429 |
| CDS | 1032650 | 1032691 |
| CDS | 1032766 | 1032945 |
| CDS | 1033288 | 1033341 |
| CDS | 1033416 | 1033457 |
| CDS | 1036014 | 1036112 |
| CDS | 1036186 | 1036320 |
| CDS | 1036436 | 1036538 |
| CDS | 1037357 | 1037430 |
| CDS | 1037522 | 1037565 |
| CDS | 1037723 | 1037801 |
| CDS | 1037925 | 1038038 |
| CDS | 1038160 | 1038264 |
| CDS | 1038358 | 1038492 |
| CDS | 1038927 | 1039007 |
| CDS | 1039061 | 1039164 |
| CDS | 1039324 | 1039372 |
| CDS | 1041528 | 1041953 |
| CDS | 1043288 | 1043380 |
| CDS | 1043467 | 1043575 |
| CDS | 1044021 | 1044163 |
| CDS | 1044271 | 1044393 |
| CDS | 1044444 | 1044533 |
| CDS | 1045360 | 1045425 |
| CDS | 1045501 | 1045593 |
| CDS | 1045667 | 1045813 |
| CDS | 1046013 | 1046111 |
| CDS | 1050179 | 1050325 |
| CDS | 1050411 | 1050716 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.