PH01000093G0670's details annotation
1.Annotation
ICBR annotation: auxin response factor 6, putative, expressed
Blast result AT1G30330 : 0
Blast annotation: auxin response factor 6
2.Location
Scaffold: PH01000093
Strand: -
| Region | Start | End |
| gene | 432981 | 438365 |
| mRNA | 432981 | 438365 |
| exon | 432981 | 434477 |
| exon | 434564 | 434754 |
| exon | 434862 | 436039 |
| exon | 436143 | 436290 |
| exon | 436469 | 436544 |
| exon | 436815 | 436937 |
| exon | 437009 | 437173 |
| exon | 437289 | 437379 |
| exon | 437422 | 438365 |
| CDS | 434282 | 434477 |
| CDS | 434564 | 434754 |
| CDS | 434862 | 436039 |
| CDS | 436143 | 436290 |
| CDS | 436469 | 436544 |
| CDS | 436815 | 436937 |
| CDS | 437009 | 437173 |
| CDS | 437289 | 437379 |
| CDS | 437422 | 437506 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | B3-ARF |
| Transcription_Regulator(from PlantTFDB) | ARF |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02362.20 | B3 | 27 | 72 |
| PF06507.12 | Auxin_resp | 97 | 180 |
| PF02309.15 | AUX_IAA | 614 | 703 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0009725 | response to hormone stimulus |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.