PH01000095G0380's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT3G53390 : 1.00E-151
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01000095
Strand: +
| Region | Start | End |
| gene | 269585 | 277331 |
| mRNA | 269585 | 277331 |
| exon | 269585 | 270042 |
| exon | 270557 | 270871 |
| exon | 270959 | 271056 |
| exon | 272095 | 272182 |
| exon | 272283 | 272366 |
| exon | 273796 | 273892 |
| exon | 273994 | 274081 |
| exon | 275050 | 275179 |
| exon | 276043 | 276135 |
| exon | 276733 | 277331 |
| CDS | 269887 | 270042 |
| CDS | 270557 | 270871 |
| CDS | 270959 | 271056 |
| CDS | 272095 | 272182 |
| CDS | 272283 | 272366 |
| CDS | 273796 | 273892 |
| CDS | 273994 | 274081 |
| CDS | 275050 | 275179 |
| CDS | 276043 | 276135 |
| CDS | 276733 | 277170 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 256 | 286 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.