Annotation of co-expression genes

PH01000095G0760's details annotation

1.Annotation

ICBR annotation: glycine cleavage system H protein, putative, expressed

Blast result AT2G35120 : 1.50E-65
Blast annotation: Single hybrid motif superfamily protein

2.Location

Scaffold: PH01000095
Strand: +

RegionStartEnd
gene536478539768
mRNA536478539768
exon536478536776
exon536869537060
exon537796537911
exon539248539418
exon539518539768
CDS536695536776
CDS536869537060
CDS537796537911
CDS539248539418
CDS539518539646

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000050protein complex,
microtubule,
structural constituent of cytoskeleton,
microtubule-based process,
protein polymerization,
Phagosome
GTP_catabolic_process
glycine cleavage complex,
glycine decarboxylation via glycine cleavage system,
GTPase activity,
GTP binding,
glycine catabolic process,
Glyoxylate_and_dicarboxylate_metabolism

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01597.18GCV_H34153

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glyoxylate and dicarboxylate metabolismglycine cleavage system H proteinko00630K02437

10.Gene Ontology

GO AccessionGO Annotation
GO:0005960glycine cleavage complex
GO:0006546glycine catabolic process
GO:0019464glycine decarboxylation via glycine cleavage system

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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