Annotation of co-expression genes

PH01000095G0830's details annotation

1.Annotation

ICBR annotation: glyceraldehyde-3-phosphate dehydrogenase, putative, expressed

Blast result AT1G79530 : 1.00E-170
Blast annotation: glyceraldehyde-3-phosphate dehydrogenase of plastid 1

2.Location

Scaffold: PH01000095
Strand: +

RegionStartEnd
gene587959593789
mRNA587959593789
exon587959588135
exon588694588767
exon588866588924
exon589012589050
exon589390589490
exon590205590338
exon591078591177
exon591276591422
exon591573591633
exon591761591858
exon591936592078
exon592366592449
exon592534592623
exon592724593789
CDS588055588135
CDS588694588767
CDS588866588924
CDS589012589050
CDS589390589490
CDS590205590338
CDS591078591177
CDS591276591422
CDS591573591633
CDS591761591858
CDS591936592078
CDS592366592449
CDS592534592623
CDS592724592778

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00044.23Gp_dh_N79187
PF02800.19Gp_dh_C240397

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glycolysis / Gluconeogenesisglyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]ko00010K00134

10.Gene Ontology

GO AccessionGO Annotation
GO:0006006glucose metabolic process
GO:0016620oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0050661NADP binding
GO:0051287NAD binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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