Gene details

Annotation of co-expression genes

PH01000095G1490's details annotation

1.Annotation

ICBR annotation: Cupin domain containing protein

Blast result AT3G04200 : 1.40E-39
Blast annotation: RmlC-like cupins superfamily protein

2.Location

Scaffold: PH01000095
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000398	protein neddylation, exocyst, apoplast, cellular protein modification process, exocytosis, Ubiquitin_mediated_proteolysis cysteine-type endopeptidase activity, small protein activating enzyme activity,
coexpression network	CFinderM000663	protein neddylation, RLK-Pelle_RLCK-VIIa-2 (from iTAK) chromosome, DNA topological change, DNA metabolic process, apoplast, cellular protein modification process, Ubiquitin_mediated_proteolysis small protein activating enzyme activity, DNA topoisomerase (ATP-hydrolyzing) activity,
coexpression network	CFinderM000664	apoplast, manganese ion binding, cysteine-type endopeptidase activity, nutrient reservoir activity,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF00190.21	Cupin_1	66	199

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
GO:0030145	manganese ion binding
GO:0045735	nutrient reservoir activity
GO:0048046	apoplast

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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