PH01000097G1540's details annotation
1.Annotation
ICBR annotation: methionyl-tRNA synthetase, putative, expressed
Blast result AT4G13780 : 0.00E+00
Blast annotation: methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative
2.Location
Scaffold: PH01000097
Strand: +
| Region | Start | End |
| gene | 992323 | 998164 |
| mRNA | 992323 | 998164 |
| exon | 992323 | 994690 |
| exon | 995159 | 995312 |
| exon | 995427 | 995594 |
| exon | 995666 | 995896 |
| exon | 995981 | 996124 |
| exon | 996280 | 996370 |
| exon | 996475 | 996581 |
| exon | 996679 | 996793 |
| exon | 996939 | 997057 |
| exon | 997168 | 997233 |
| exon | 997539 | 997682 |
| exon | 997775 | 998164 |
| CDS | 994425 | 994690 |
| CDS | 995159 | 995312 |
| CDS | 995427 | 995594 |
| CDS | 995666 | 995896 |
| CDS | 995981 | 996124 |
| CDS | 996280 | 996370 |
| CDS | 996475 | 996581 |
| CDS | 996679 | 996793 |
| CDS | 996939 | 997057 |
| CDS | 997168 | 997233 |
| CDS | 997539 | 997682 |
| CDS | 997775 | 997897 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09334.10 | tRNA-synt_1g | 20 | 418 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Selenocompound metabolism | methionyl-tRNA synthetase [EC:6.1.1.10] | ko00450 | K01874 |
| Aminoacyl-tRNA biosynthesis | methionyl-tRNA synthetase [EC:6.1.1.10] | ko00970 | K01874 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0004812 | aminoacyl-tRNA ligase activity |
| GO:0004825 | methionine-tRNA ligase activity |
| GO:0005524 | ATP binding |
| GO:0005737 | cytoplasm |
| GO:0006418 | tRNA aminoacylation for protein translation |
| GO:0006431 | methionyl-tRNA aminoacylation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.