PH01000098G0490's details annotation
1.Annotation
ICBR annotation: OsSCP1 - Putative Serine Carboxypeptidase homologue, expressed
Blast result AT2G35780 : 4.00E-172
Blast annotation: serine carboxypeptidase-like 26
2.Location
Scaffold: PH01000098
Strand: +
| Region | Start | End |
| gene | 268173 | 270966 |
| mRNA | 268173 | 270966 |
| exon | 268173 | 268790 |
| exon | 268874 | 268969 |
| exon | 269076 | 269168 |
| exon | 269285 | 269370 |
| exon | 269452 | 269727 |
| exon | 269932 | 270059 |
| exon | 270160 | 270255 |
| exon | 270428 | 270533 |
| exon | 270635 | 270966 |
| CDS | 268565 | 268790 |
| CDS | 268874 | 268969 |
| CDS | 269076 | 269168 |
| CDS | 269285 | 269370 |
| CDS | 269452 | 269727 |
| CDS | 269932 | 270059 |
| CDS | 270160 | 270255 |
| CDS | 270428 | 270533 |
| CDS | 270635 | 270799 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00450.21 | Peptidase_S10 | 1 | 409 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004185 | serine-type carboxypeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.