PH01000098G0690's details annotation
1.Annotation
ICBR annotation: NF-X1-type zinc finger protein, putative, expressed
Blast result AT5G05660 : 2.00E-166
Blast annotation: sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors
2.Location
Scaffold: PH01000098
Strand: -
| Region | Start | End |
| gene | 384957 | 391127 |
| mRNA | 384957 | 391127 |
| exon | 384957 | 386097 |
| exon | 386179 | 386265 |
| exon | 386381 | 386587 |
| exon | 386743 | 386824 |
| exon | 386975 | 387165 |
| exon | 387300 | 387500 |
| exon | 387603 | 387765 |
| exon | 388884 | 388939 |
| exon | 389609 | 390400 |
| exon | 390820 | 391127 |
| CDS | 385930 | 386097 |
| CDS | 386179 | 386265 |
| CDS | 386381 | 386587 |
| CDS | 386743 | 386824 |
| CDS | 386975 | 387165 |
| CDS | 387300 | 387500 |
| CDS | 387603 | 387765 |
| CDS | 388884 | 388939 |
| CDS | 389609 | 390400 |
| CDS | 390820 | 391053 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | NF-X1 |
| Transcription_Regulator(from PlantTFDB) | NF-X1 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01422.16 | zf-NF-X1 | 149 | 165 |
| PF01422.16 | zf-NF-X1 | 201 | 218 |
| PF01422.16 | zf-NF-X1 | 254 | 272 |
| PF01422.16 | zf-NF-X1 | 308 | 327 |
| PF01422.16 | zf-NF-X1 | 350 | 361 |
| PF01422.16 | zf-NF-X1 | 436 | 446 |
| PF01422.16 | zf-NF-X1 | 488 | 505 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.