PH01000098G0720's details annotation
1.Annotation
ICBR annotation: fasciclin domain containing protein, expressed
Blast result AT5G03170 : 9.10E-58
Blast annotation: FASCICLIN-like arabinogalactan-protein 11
2.Location
Scaffold: PH01000098
Strand: -
| Region | Start | End |
| gene | 401363 | 404167 |
| mRNA | 401363 | 404167 |
| exon | 401363 | 401973 |
| exon | 403107 | 404167 |
| CDS | 401693 | 401973 |
| CDS | 403107 | 403839 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000551 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, methionine biosynthetic process, Selenocompound_metabolism cellular amino acid biosynthetic process, Cysteine_and_methionine_metabolism zinc ion binding, |
| coexpression network | CFinderM000703 | Elongator holoenzyme complex, NEK (from iTAK) apoplast, lignin catabolic process, regulation of transcription from RNA polymerase II promoter, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02469.21 | Fasciclin | 60 | 194 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.