PH01000098G1100's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G63220 : 1.90E-83
Blast annotation: -
2.Location
Scaffold: PH01000098
Strand: +
| Region | Start | End |
| gene | 606089 | 613510 |
| mRNA | 606089 | 613510 |
| exon | 606089 | 606292 |
| exon | 607102 | 607181 |
| exon | 607738 | 607816 |
| exon | 608234 | 608315 |
| exon | 608932 | 608980 |
| exon | 609319 | 609404 |
| exon | 610131 | 610287 |
| exon | 611125 | 611215 |
| exon | 611359 | 611442 |
| exon | 611900 | 611946 |
| exon | 612320 | 612448 |
| exon | 612566 | 613510 |
| CDS | 606239 | 606292 |
| CDS | 607102 | 607181 |
| CDS | 607738 | 607816 |
| CDS | 608234 | 608315 |
| CDS | 608932 | 608980 |
| CDS | 609319 | 609404 |
| CDS | 610131 | 610287 |
| CDS | 611125 | 611215 |
| CDS | 611359 | 611442 |
| CDS | 611900 | 611946 |
| CDS | 612320 | 612448 |
| CDS | 612566 | 612656 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000789 | Glycine,_serine_and_threonine_metabolism Proteasome |
| coexpression network | CFinderM001421 | protein catabolic process, Proteasome Glycine,_serine_and_threonine_metabolism protein phosphatase type 2A complex, cytoplasm, protein phosphatase type 2A regulator activity, Rab GDP-dissociation inhibitor activity, nucleoside-triphosphatase activity, hydrolase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04190.12 | DUF410 | 50 | 250 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.