PH01000100G1140's details annotation
1.Annotation
ICBR annotation: 40S ribosomal protein S3a, putative, expressed
Blast result AT4G34670 : 1.00E-113
Blast annotation: Ribosomal protein S3Ae
2.Location
Scaffold: PH01000100
Strand: -
| Region | Start | End |
| gene | 815683 | 820214 |
| mRNA | 815683 | 820214 |
| exon | 815683 | 816687 |
| exon | 816794 | 816994 |
| exon | 817096 | 817281 |
| exon | 817355 | 817492 |
| exon | 818883 | 818988 |
| exon | 819092 | 820214 |
| CDS | 816586 | 816687 |
| CDS | 816794 | 816994 |
| CDS | 817096 | 817281 |
| CDS | 817355 | 817492 |
| CDS | 818883 | 818988 |
| CDS | 819092 | 819150 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01015.17 | Ribosomal_S3Ae | 15 | 221 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | small subunit ribosomal protein S3Ae | ko03011 | K02984 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.