PH01000100G1390's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G19330 : 8.10E-40
Blast annotation: -
2.Location
Scaffold: PH01000100
Strand: -
| Region | Start | End |
| gene | 969941 | 974490 |
| mRNA | 969941 | 974490 |
| exon | 969941 | 970918 |
| exon | 971056 | 971121 |
| exon | 971218 | 971280 |
| exon | 971503 | 971645 |
| exon | 972277 | 972403 |
| exon | 973061 | 973260 |
| exon | 973830 | 973839 |
| exon | 974250 | 974490 |
| CDS | 970859 | 970918 |
| CDS | 971056 | 971121 |
| CDS | 971218 | 971280 |
| CDS | 971503 | 971645 |
| CDS | 972277 | 972403 |
| CDS | 973061 | 973260 |
| CDS | 973830 | 973839 |
| CDS | 974250 | 974372 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001183 | RLK-Pelle_LRR-VI-2 (from iTAK) multicellular organismal development, CAMK_CDPK (from iTAK) |
| coexpression network | CFinderM001263 | RLK-Pelle_LRR-VI-2 (from iTAK) ribosome biogenesis, hydrolase activity, acting on glycosyl bonds, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13867.5 | SAP30_Sin3_bdg | 208 | 253 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.