PH01000101G0140's details annotation
1.Annotation
ICBR annotation: cysteine synthase, putative, expressed
Blast result AT1G55880 : 9.00E-161
Blast annotation: Pyridoxal-5-phosphate-dependent enzyme family protein
2.Location
Scaffold: PH01000101
Strand: +
| Region | Start | End |
| gene | 93940 | 97754 |
| mRNA | 93940 | 97754 |
| exon | 93940 | 94518 |
| exon | 94615 | 94689 |
| exon | 95899 | 96042 |
| exon | 96305 | 96769 |
| exon | 96854 | 97089 |
| exon | 97441 | 97754 |
| CDS | 94306 | 94518 |
| CDS | 94615 | 94689 |
| CDS | 95899 | 96042 |
| CDS | 96305 | 96769 |
| CDS | 96854 | 97089 |
| CDS | 97441 | 97660 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00291.24 | PALP | 52 | 177 |
| PF00291.24 | PALP | 244 | 418 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Sulfur metabolism | cysteine synthase A [EC:2.5.1.47] | ko00920 | K01738 |
| Cysteine and methionine metabolism | cysteine synthase A [EC:2.5.1.47] | ko00270 | K01738 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006535 | cysteine biosynthetic process from serine |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.