PH01000101G0570's details annotation
1.Annotation
ICBR annotation: potyvirus VPg interacting protein, putative, expressed
Blast result AT3G63500 : 3.00E-125
Blast annotation: Protein of unknown function (DUF1423)
2.Location
Scaffold: PH01000101
Strand: +
| Region | Start | End |
| gene | 336243 | 341489 |
| mRNA | 336243 | 341489 |
| exon | 336243 | 340321 |
| exon | 340637 | 341489 |
| CDS | 337051 | 340321 |
| CDS | 340637 | 341190 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001274 | mitochondrial ribosome, protein folding, SNARE_interactions_in_vesicular_transport PHD Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001397 | GT4 GlycosylTransferases |
| coexpression network | CFinderM001788 | protein folding, protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07227.10 | PHD_Oberon | 924 | 1047 |
| PF16312.4 | Oberon_cc | 1154 | 1265 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.