Annotation of co-expression genes

PH01000101G1810's details annotation

1.Annotation

ICBR annotation: two-component response regulator, putative, expressed

Blast result AT3G16857 : 1.80E-91
Blast annotation: response regulator 1

2.Location

Scaffold: PH01000101
Strand: +

RegionStartEnd
gene11626881168671
mRNA11626881168671
exon11626881164103
exon11656511165803
exon11658881166286
exon11664931166569
exon11672531168671
CDS11639801164103
CDS11656511165803
CDS11658881166286
CDS11664931166569
CDS11672531168569

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)GARP-ARR-B
Transcription_Regulator(from PlantTFDB)ARR-B

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00072.23Response_reg18126
PF00249.30Myb_DNA-binding204253

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Plant hormone signal transductiontwo-component response regulator ARR-B familyko04075K14491

10.Gene Ontology

GO AccessionGO Annotation
GO:0000156phosphorelay response regulator activity
GO:0000160phosphorelay signal transduction system
GO:0003677DNA binding
GO:0003682chromatin binding
GO:0006355regulation of transcription, DNA-dependent

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.