Annotation of co-expression genes

PH01000102G1710's details annotation

1.Annotation

ICBR annotation: cystathionine gamma-synthase, putative, expressed

Blast result AT3G01120 : 3.00E-141
Blast annotation: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

2.Location

Scaffold: PH01000102
Strand: -

RegionStartEnd
gene11743001178853
mRNA11743001178853
exon11743001174515
exon11746051174723
exon11748071174902
exon11758441175930
exon11762841176487
exon11765811176640
exon11770431177211
exon11773101177383
exon11774771177580
exon11783851178853
CDS11743951174515
CDS11746051174723
CDS11748071174902
CDS11758441175930
CDS11762841176487
CDS11765811176640
CDS11770431177211
CDS11773101177383
CDS11774771177580
CDS11783851178538

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001454Selenocompound_metabolism
Sulfur_metabolism
Cysteine_and_methionine_metabolism

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01053.19Cys_Met_Meta_PP60285

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Sulfur metabolismcystathionine gamma-synthase [EC:2.5.1.48]ko00920K01739
Cysteine and methionine metabolismcystathionine gamma-synthase [EC:2.5.1.48]ko00270K01739
Selenocompound metabolismcystathionine gamma-synthase [EC:2.5.1.48]ko00450K01739

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0030170pyridoxal phosphate binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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