PH01000103G0450's details annotation
1.Annotation
ICBR annotation: tetrapyrrole methylase family protein, putative, expressed
Blast result AT1G45110 : 7.30E-57
Blast annotation: Tetrapyrrole (Corrin/Porphyrin) Methylases
2.Location
Scaffold: PH01000103
Strand: +
| Region | Start | End |
| gene | 358178 | 366681 |
| mRNA | 358178 | 366681 |
| exon | 358178 | 359650 |
| exon | 361394 | 361522 |
| exon | 361999 | 362150 |
| exon | 362413 | 362455 |
| exon | 362792 | 362965 |
| exon | 363117 | 363181 |
| exon | 363451 | 363535 |
| exon | 364809 | 364898 |
| exon | 365263 | 365315 |
| exon | 365900 | 366031 |
| exon | 366069 | 366681 |
| CDS | 359300 | 359650 |
| CDS | 361394 | 361522 |
| CDS | 361999 | 362150 |
| CDS | 362413 | 362455 |
| CDS | 362792 | 362965 |
| CDS | 363117 | 363181 |
| CDS | 363451 | 363535 |
| CDS | 364809 | 364898 |
| CDS | 365263 | 365315 |
| CDS | 365900 | 366031 |
| CDS | 366069 | 366162 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0008168 | methyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.