PH01000103G1690's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G14300 : 1.00E-84
Blast annotation: ARM repeat superfamily protein
2.Location
Scaffold: PH01000103
Strand: -
| Region | Start | End |
| gene | 1189878 | 1196658 |
| mRNA | 1189878 | 1196658 |
| exon | 1189878 | 1190517 |
| exon | 1191559 | 1191672 |
| exon | 1192005 | 1192136 |
| exon | 1192741 | 1192854 |
| exon | 1193398 | 1193546 |
| exon | 1193954 | 1194032 |
| exon | 1194948 | 1196658 |
| CDS | 1190461 | 1190517 |
| CDS | 1191559 | 1191672 |
| CDS | 1192005 | 1192136 |
| CDS | 1192741 | 1192854 |
| CDS | 1193398 | 1193546 |
| CDS | 1193954 | 1194032 |
| CDS | 1194948 | 1195058 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000702 | Regulation_of_autophagy Nitrogen_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04063.13 | DUF383 | 16 | 182 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.