PH01000104G1630's details annotation
1.Annotation
ICBR annotation: blight resistance protein T118, putative
Blast result AT3G14470 : 4.70E-26
Blast annotation: NB-ARC domain-containing disease resistance protein
2.Location
Scaffold: PH01000104
Strand: -
| Region | Start | End |
| gene | 1151817 | 1156359 |
| mRNA | 1151817 | 1156359 |
| exon | 1151817 | 1152060 |
| exon | 1152253 | 1153756 |
| exon | 1154008 | 1154313 |
| exon | 1154915 | 1155551 |
| exon | 1155714 | 1156359 |
| CDS | 1152029 | 1152060 |
| CDS | 1152253 | 1153756 |
| CDS | 1154008 | 1154313 |
| CDS | 1154915 | 1155551 |
| CDS | 1155714 | 1155901 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000709 | ADP_binding defense response, RLK-Pelle_LRK10L-2 (from iTAK) tryptophanyl-tRNA aminoacylation, Aminoacyl-tRNA_biosynthesis tryptophan-tRNA ligase activity, cullin-RING ubiquitin ligase complex, regulation of ARF GTPase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00931.21 | NB-ARC | 144 | 372 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006952 | defense response |
| GO:0043531 | ADP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.