PH01000105G1350's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G22810 : 1.40E-99
Blast annotation: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region
2.Location
Scaffold: PH01000105
Strand: +
| Region | Start | End |
| gene | 923844 | 930362 |
| mRNA | 923844 | 930362 |
| exon | 923844 | 924253 |
| exon | 925097 | 925210 |
| exon | 928518 | 928911 |
| exon | 929002 | 929277 |
| exon | 929370 | 929419 |
| exon | 929513 | 929570 |
| exon | 929684 | 930362 |
| CDS | 923969 | 924253 |
| CDS | 925097 | 925210 |
| CDS | 928518 | 928911 |
| CDS | 929002 | 929277 |
| CDS | 929370 | 929419 |
| CDS | 929513 | 929570 |
| CDS | 929684 | 929892 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05703.10 | Auxin_canalis | 18 | 292 |
| PF08458.9 | PH_2 | 349 | 454 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.