PH01000106G0580's details annotation
1.Annotation
ICBR annotation: mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed
Blast result AT3G02090 : 0.00E+00
Blast annotation: Insulinase (Peptidase family M16) protein
2.Location
Scaffold: PH01000106
Strand: -
| Region | Start | End |
| gene | 444381 | 450736 |
| mRNA | 444381 | 450736 |
| exon | 444381 | 446125 |
| exon | 446641 | 446748 |
| exon | 446837 | 446902 |
| exon | 447159 | 447257 |
| exon | 448041 | 448149 |
| exon | 448259 | 448410 |
| exon | 448490 | 448627 |
| exon | 448754 | 448918 |
| exon | 449758 | 450736 |
| CDS | 446039 | 446125 |
| CDS | 446641 | 446748 |
| CDS | 446837 | 446902 |
| CDS | 447159 | 447257 |
| CDS | 448041 | 448149 |
| CDS | 448259 | 448410 |
| CDS | 448490 | 448627 |
| CDS | 448754 | 448918 |
| CDS | 449758 | 450276 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001748 | methionine metabolic process, methylenetetrahydrofolate reductase (NADPH) activity, One_carbon_pool_by_folate Carbon_fixation_pathways_in_prokaryotes Protein_export |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00675.19 | Peptidase_M16 | 56 | 202 |
| PF05193.20 | Peptidase_M16_C | 209 | 395 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004222 | metalloendopeptidase activity |
| GO:0006508 | proteolysis |
| GO:0046872 | metal ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.