PH01000106G0670's details annotation
1.Annotation
ICBR annotation: SNARE domain containing protein, putative, expressed
Blast result AT5G61210 : 8.40E-27
Blast annotation: soluble N-ethylmaleimide-sensitive factor adaptor protein 33
2.Location
Scaffold: PH01000106
Strand: -
| Region | Start | End |
| gene | 518233 | 521022 |
| mRNA | 518233 | 521022 |
| exon | 518233 | 519218 |
| exon | 519328 | 519425 |
| exon | 519503 | 519627 |
| exon | 519937 | 519937 |
| exon | 520406 | 521022 |
| CDS | 519119 | 519218 |
| CDS | 519328 | 519425 |
| CDS | 519503 | 519627 |
| CDS | 519937 | 519937 |
| CDS | 520406 | 520738 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000622 | exocyst, SOS_response DNA-dependent ATPase activity, single-stranded DNA binding, DNA metabolic process, exocytosis, RLK-Pelle_RLCK-VIIa-2 (from iTAK) NAC Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000682 | DNA_replication Ino80_complex DNA_replication,_Okazaki_fragment_processing nucleoside binding, single-stranded_DNA-dependent_ATPase_activity 5'-flap_endonuclease_activity ATP-dependent_5'-3'_DNA_helicase_activity DNA helicase activity, nucleobase-containing compound metabolic process, DNA-directed DNA polymerase activity, DNA_replication |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.