PH01000106G0710's details annotation
1.Annotation
ICBR annotation: PPR repeat containing protein, expressed
Blast result AT1G63070 : 3.60E-34
Blast annotation: pentatricopeptide (PPR) repeat-containing protein
2.Location
Scaffold: PH01000106
Strand: +
| Region | Start | End |
| gene | 555601 | 558623 |
| mRNA | 555601 | 558623 |
| exon | 555601 | 558033 |
| exon | 558086 | 558623 |
| CDS | 557711 | 558033 |
| CDS | 558086 | 558512 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12854.6 | PPR_1 | 5 | 36 |
| PF13041.5 | PPR_2 | 45 | 90 |
| PF01535.19 | PPR | 133 | 161 |
| PF13041.5 | PPR_2 | 165 | 213 |
| PF12854.6 | PPR_1 | 228 | 249 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.