PH01000106G0760's details annotation
1.Annotation
ICBR annotation: leucine rich repeat containing protein, expressed
Blast result AT5G07910 : 8.20E-44
Blast annotation: Leucine-rich repeat (LRR) family protein
2.Location
Scaffold: PH01000106
Strand: -
| Region | Start | End |
| gene | 590084 | 594263 |
| mRNA | 590084 | 594263 |
| exon | 590084 | 590313 |
| exon | 590725 | 590810 |
| exon | 591299 | 591389 |
| exon | 591684 | 591769 |
| exon | 591970 | 592078 |
| exon | 592223 | 592269 |
| exon | 592768 | 592837 |
| exon | 593581 | 593708 |
| exon | 593877 | 594263 |
| CDS | 590200 | 590313 |
| CDS | 590725 | 590810 |
| CDS | 591299 | 591389 |
| CDS | 591684 | 591769 |
| CDS | 591970 | 592078 |
| CDS | 592223 | 592269 |
| CDS | 592768 | 592837 |
| CDS | 593581 | 593708 |
| CDS | 593877 | 593922 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.