Annotation of co-expression genes

PH01000107G1130's details annotation

1.Annotation

ICBR annotation: homeobox domain containing protein, expressed

Blast result AT5G41410 : 2.50E-75
Blast annotation: POX (plant homeobox) family protein

2.Location

Scaffold: PH01000107
Strand: +

RegionStartEnd
gene823761830184
mRNA823761830184
exon823761826007
exon826732827114
exon827896827956
exon828291830184
CDS825348826007
CDS826732827114
CDS827896827956
CDS828291828905

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000669RLK-Pelle_LRR-Xa (from iTAK)
copper_ion_transmembrane_transport
HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
copper ion transmembrane transporter activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)HB-BELL
Transcription_Regulator(from PlantTFDB)TALE

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07526.10POX146270
PF05920.10Homeobox_KN340379

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0006355regulation of transcription, DNA-dependent
GO:0043565sequence-specific DNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.