PH01000108G0110's details annotation
1.Annotation
ICBR annotation: BTBN7 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed
Blast result AT2G14820 : 3.00E-142
Blast annotation: Phototropic-responsive NPH3 family protein
2.Location
Scaffold: PH01000108
Strand: +
| Region | Start | End |
| gene | 101960 | 108941 |
| mRNA | 101960 | 108941 |
| exon | 101960 | 104157 |
| exon | 106009 | 106078 |
| exon | 106714 | 107895 |
| exon | 108113 | 108941 |
| CDS | 104096 | 104157 |
| CDS | 106009 | 106078 |
| CDS | 106714 | 107895 |
| CDS | 108113 | 108562 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00651.30 | BTB | 28 | 117 |
| PF03000.13 | NPH3 | 211 | 438 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.