PH01000108G0430's details annotation
1.Annotation
ICBR annotation: cyclin, putative, expressed
Blast result AT5G43080 : 1.30E-72
Blast annotation: Cyclin A3;1
2.Location
Scaffold: PH01000108
Strand: -
| Region | Start | End |
| gene | 301306 | 304030 |
| mRNA | 301306 | 304030 |
| exon | 301306 | 301625 |
| exon | 301862 | 301996 |
| exon | 302090 | 302239 |
| exon | 302351 | 302381 |
| exon | 302487 | 302563 |
| exon | 302664 | 302739 |
| exon | 302830 | 303062 |
| exon | 303159 | 304030 |
| CDS | 301509 | 301625 |
| CDS | 301862 | 301996 |
| CDS | 302090 | 302239 |
| CDS | 302351 | 302381 |
| CDS | 302487 | 302563 |
| CDS | 302664 | 302739 |
| CDS | 302830 | 303062 |
| CDS | 303159 | 303470 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00134.22 | Cyclin_N | 95 | 171 |
| PF02984.18 | Cyclin_C | 174 | 295 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000079 | regulation of cyclin-dependent protein serine/threonine kinase activity |
| GO:0005634 | nucleus |
| GO:0019901 | protein kinase binding |
| GO:0051726 | regulation of cell cycle |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.