PH01000108G1240's details annotation
1.Annotation
ICBR annotation: PPR repeat containing protein, expressed
Blast result AT5G55840 : 0.00E+00
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01000108
Strand: -
| Region | Start | End |
| gene | 932368 | 938407 |
| mRNA | 932368 | 938407 |
| exon | 932368 | 932637 |
| exon | 932948 | 936195 |
| exon | 937714 | 938407 |
| CDS | 932620 | 932637 |
| CDS | 932948 | 936195 |
| CDS | 937714 | 937873 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 231 | 258 |
| PF13041.5 | PPR_2 | 261 | 310 |
| PF13041.5 | PPR_2 | 331 | 380 |
| PF01535.19 | PPR | 405 | 433 |
| PF13041.5 | PPR_2 | 439 | 485 |
| PF01535.19 | PPR | 509 | 538 |
| PF13041.5 | PPR_2 | 578 | 625 |
| PF01535.19 | PPR | 650 | 679 |
| PF13041.5 | PPR_2 | 681 | 730 |
| PF01535.19 | PPR | 756 | 783 |
| PF13041.5 | PPR_2 | 790 | 834 |
| PF13041.5 | PPR_2 | 862 | 905 |
| PF01535.19 | PPR | 933 | 960 |
| PF12854.6 | PPR_1 | 994 | 1026 |
| PF13041.5 | PPR_2 | 1033 | 1075 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.