PH01000109G1050's details annotation
1.Annotation
ICBR annotation: SNF2 family N-terminal domain containing protein, expressed
Blast result AT1G61140 : 0.00E+00
Blast annotation: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related
2.Location
Scaffold: PH01000109
Strand: -
| Region | Start | End |
| gene | 734376 | 747420 |
| mRNA | 734376 | 747420 |
| exon | 734376 | 735131 |
| exon | 735239 | 735799 |
| exon | 736726 | 736905 |
| exon | 737386 | 737516 |
| exon | 739919 | 740798 |
| exon | 740875 | 740952 |
| exon | 741038 | 741109 |
| exon | 743173 | 744116 |
| exon | 744286 | 744405 |
| exon | 744490 | 744621 |
| exon | 745304 | 745493 |
| exon | 746090 | 747420 |
| CDS | 734853 | 735131 |
| CDS | 735239 | 735799 |
| CDS | 736726 | 736905 |
| CDS | 737386 | 737516 |
| CDS | 739919 | 740798 |
| CDS | 740875 | 740952 |
| CDS | 741038 | 741109 |
| CDS | 743173 | 744116 |
| CDS | 744286 | 744405 |
| CDS | 744490 | 744621 |
| CDS | 745304 | 745493 |
| CDS | 746090 | 746242 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001304 | nucleoside-triphosphatase activity, ATPase activity, coupled to transmembrane movement of substances, GT47 GlycosylTransferases RLK-Pelle_CR4L (from iTAK) ABC_transporters ATPase activity, ATP binding, nucleotide binding, SNF2 Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001870 | Basal_transcription_factors SNF2 Transcription_Regulator(from iTAK) transferase activity, transferring pentosyl groups, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SNF2 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00176.22 | SNF2_N | 554 | 932 |
| PF13923.5 | zf-C3HC4_2 | 964 | 993 |
| PF00271.30 | Helicase_C | 1093 | 1193 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0003677 | DNA binding |
| GO:0004386 | helicase activity |
| GO:0005524 | ATP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.