PH01000109G1160's details annotation
1.Annotation
ICBR annotation: katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed
Blast result AT1G61210 : 9.30E-78
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01000109
Strand: +
| Region | Start | End |
| gene | 826758 | 838021 |
| mRNA | 826758 | 838021 |
| exon | 826758 | 828516 |
| exon | 830223 | 830351 |
| exon | 830449 | 830566 |
| exon | 831221 | 831463 |
| exon | 831760 | 831830 |
| exon | 832068 | 832631 |
| exon | 832807 | 832898 |
| exon | 832964 | 833114 |
| exon | 833220 | 833795 |
| exon | 833978 | 834052 |
| exon | 834128 | 834271 |
| exon | 834339 | 834501 |
| exon | 834592 | 835257 |
| exon | 835351 | 835407 |
| exon | 835515 | 835651 |
| exon | 836126 | 836251 |
| exon | 836754 | 836837 |
| exon | 836919 | 837031 |
| exon | 837281 | 837397 |
| exon | 837894 | 838021 |
| CDS | 827710 | 828516 |
| CDS | 830223 | 830351 |
| CDS | 830449 | 830566 |
| CDS | 831221 | 831463 |
| CDS | 831760 | 831830 |
| CDS | 832068 | 832631 |
| CDS | 832807 | 832898 |
| CDS | 832964 | 833114 |
| CDS | 833220 | 833795 |
| CDS | 833978 | 834052 |
| CDS | 834128 | 834271 |
| CDS | 834339 | 834501 |
| CDS | 834592 | 835257 |
| CDS | 835351 | 835407 |
| CDS | 835515 | 835651 |
| CDS | 836126 | 836251 |
| CDS | 836754 | 836837 |
| CDS | 836919 | 837031 |
| CDS | 837281 | 837397 |
| CDS | 837894 | 837963 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 309 | 346 |
| PF00400.31 | WD40 | 365 | 401 |
| PF00400.31 | WD40 | 405 | 443 |
| PF00153.26 | Mito_carr | 541 | 622 |
| PF13925.5 | Katanin_con80 | 1356 | 1485 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008017 | microtubule binding |
| GO:0008352 | katanin complex |
| GO:0051013 | microtubule severing |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.