PH01000110G0250's details annotation
1.Annotation
ICBR annotation: oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed
Blast result AT4G20760 : 2.00E-105
Blast annotation: NAD(P)-binding Rossmann-fold superfamily protein
2.Location
Scaffold: PH01000110
Strand: -
| Region | Start | End |
| gene | 221601 | 223683 |
| mRNA | 221601 | 223683 |
| exon | 221601 | 221931 |
| exon | 222121 | 222274 |
| exon | 222438 | 222520 |
| exon | 222629 | 222722 |
| exon | 222978 | 223130 |
| exon | 223387 | 223683 |
| CDS | 221699 | 221931 |
| CDS | 222121 | 222274 |
| CDS | 222438 | 222520 |
| CDS | 222629 | 222722 |
| CDS | 222978 | 223130 |
| CDS | 223387 | 223518 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00106.24 | adh_short | 32 | 239 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016491 | oxidoreductase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.