PH01000110G0560's details annotation
1.Annotation
ICBR annotation: C3-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C3 subfamily conserved sequence, expressed
Blast result AT1G21780 : 1.50E-31
Blast annotation: BTB/POZ domain-containing protein
2.Location
Scaffold: PH01000110
Strand: +
| Region | Start | End |
| gene | 421245 | 425498 |
| mRNA | 421245 | 425498 |
| exon | 421245 | 423544 |
| exon | 424106 | 424125 |
| exon | 424790 | 424909 |
| exon | 425193 | 425498 |
| CDS | 423432 | 423544 |
| CDS | 424106 | 424125 |
| CDS | 424790 | 424909 |
| CDS | 425193 | 425347 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000079 | TRAF Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | TRAF |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00651.30 | BTB | 86 | 131 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.