PH01000110G0830's details annotation
1.Annotation
ICBR annotation: G-patch domain containing protein, putative, expressed
Blast result AT1G17070 : 0.00E+00
Blast annotation: GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain
2.Location
Scaffold: PH01000110
Strand: +
| Region | Start | End |
| gene | 582807 | 588442 |
| mRNA | 582807 | 588442 |
| exon | 582807 | 588442 |
| CDS | 585046 | 587586 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12457.7 | TIP_N | 7 | 101 |
| PF01585.22 | G-patch | 184 | 224 |
| PF07842.11 | GCFC | 402 | 672 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.