Annotation of co-expression genes

PH01000110G1200's details annotation

1.Annotation

ICBR annotation: SET domain containing protein, expressed

Blast result AT5G42400 : 1.90E-55
Blast annotation: SET domain protein 25

2.Location

Scaffold: PH01000110
Strand: -

RegionStartEnd
gene900908908943
mRNA900908908943
exon900908902076
exon902735902788
exon903123903203
exon903288903410
exon903494903897
exon903981904619
exon904707904887
exon904975905283
exon905389905736
exon905840906130
exon906837906959
exon907052907369
exon907680907763
exon907971908943
CDS901972902076
CDS902735902788
CDS903123903203
CDS903288903410
CDS903494903897
CDS903981904619
CDS904707904887
CDS904975905283
CDS905389905736
CDS905840906130
CDS906837906959
CDS907052907369
CDS907680907763
CDS907971908000

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)SET

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00856.27SET925995

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.