PH01000111G1390's details annotation
1.Annotation
ICBR annotation: nucleolar protein 5A, putative, expressed
Blast result AT1G56110 : 0.00E+00
Blast annotation: homolog of nucleolar protein NOP56
2.Location
Scaffold: PH01000111
Strand: -
| Region | Start | End |
| gene | 949148 | 952390 |
| mRNA | 949148 | 952390 |
| exon | 949148 | 949994 |
| exon | 950123 | 950260 |
| exon | 950574 | 950722 |
| exon | 950873 | 951125 |
| exon | 951212 | 951399 |
| exon | 951496 | 951653 |
| exon | 951806 | 952020 |
| exon | 952123 | 952390 |
| CDS | 949651 | 949994 |
| CDS | 950123 | 950260 |
| CDS | 950574 | 950722 |
| CDS | 950873 | 951125 |
| CDS | 951212 | 951399 |
| CDS | 951496 | 951653 |
| CDS | 951806 | 952020 |
| CDS | 952123 | 952327 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000179 | Ribosome_biogenesis_in_eukaryotes aspartyl-tRNA aminoacylation, aspartate-tRNA ligase activity, tRNA aminoacylation for protein translation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08156.12 | NOP5NT | 4 | 69 |
| PF01798.17 | Nop | 177 | 409 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome biogenesis in eukaryotes | nucleolar protein 56 | ko03008 | K14564 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.