PH01000112G0020's details annotation
1.Annotation
ICBR annotation: ribosomal protein L24, putative, expressed
Blast result AT2G36620 : 5.40E-56
Blast annotation: ribosomal protein L24
2.Location
Scaffold: PH01000112
Strand: +
| Region | Start | End |
| gene | 7242 | 9356 |
| mRNA | 7242 | 9356 |
| exon | 7242 | 7338 |
| exon | 7499 | 7574 |
| exon | 7659 | 7760 |
| exon | 8514 | 8662 |
| exon | 8889 | 9356 |
| CDS | 7328 | 7338 |
| CDS | 7499 | 7574 |
| CDS | 7659 | 7760 |
| CDS | 8514 | 8662 |
| CDS | 8889 | 9036 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001094 | Ribosome translation, protein methylation, structural constituent of ribosome, intracellular, methyltransferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01246.19 | Ribosomal_L24e | 3 | 67 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L24e | ko03011 | K02896 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.