PH01000112G0160's details annotation
1.Annotation
ICBR annotation: HEAT repeat family protein, putative, expressed
Blast result AT2G35630 : 1.80E-97
Blast annotation: ARM repeat superfamily protein
2.Location
Scaffold: PH01000112
Strand: -
| Region | Start | End |
| gene | 88703 | 94851 |
| mRNA | 88703 | 94851 |
| exon | 88703 | 88826 |
| exon | 88875 | 89012 |
| exon | 89068 | 89150 |
| exon | 89462 | 89525 |
| exon | 89567 | 89594 |
| exon | 90570 | 90634 |
| exon | 90721 | 90898 |
| exon | 90980 | 91059 |
| exon | 92440 | 92563 |
| exon | 92648 | 92753 |
| exon | 92903 | 94851 |
| CDS | 88725 | 88826 |
| CDS | 88875 | 89012 |
| CDS | 89068 | 89150 |
| CDS | 89462 | 89525 |
| CDS | 89567 | 89594 |
| CDS | 90570 | 90634 |
| CDS | 90721 | 90898 |
| CDS | 90980 | 91059 |
| CDS | 92440 | 92563 |
| CDS | 92648 | 92753 |
| CDS | 92903 | 93065 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.