PH01000112G0530's details annotation
1.Annotation
ICBR annotation: KH domain containing protein, putative, expressed
Blast result AT3G08620 : 3.20E-65
Blast annotation: RNA-binding KH domain-containing protein
2.Location
Scaffold: PH01000112
Strand: +
| Region | Start | End |
| gene | 379088 | 382819 |
| mRNA | 379088 | 382819 |
| exon | 379088 | 379687 |
| exon | 379857 | 379945 |
| exon | 380265 | 380416 |
| exon | 380457 | 380531 |
| exon | 381451 | 381564 |
| exon | 381640 | 381756 |
| exon | 381945 | 382088 |
| exon | 382481 | 382819 |
| CDS | 379596 | 379687 |
| CDS | 379857 | 379945 |
| CDS | 380265 | 380416 |
| CDS | 380457 | 380531 |
| CDS | 381451 | 381564 |
| CDS | 381640 | 381756 |
| CDS | 381945 | 382088 |
| CDS | 382481 | 382633 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000473 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16544.4 | STAR_dimer | 28 | 69 |
| PF00013.28 | KH_1 | 164 | 206 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.