PH01000112G0900's details annotation
1.Annotation
ICBR annotation: pentatricopeptide repeat-containing protein, putative, expressed
Blast result AT3G11460 : 2.00E-157
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01000112
Strand: +
| Region | Start | End |
| gene | 684006 | 686564 |
| mRNA | 684006 | 686564 |
| exon | 684006 | 686564 |
| CDS | 684165 | 686108 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 101 | 123 |
| PF01535.19 | PPR | 136 | 164 |
| PF01535.19 | PPR | 204 | 226 |
| PF01535.19 | PPR | 234 | 262 |
| PF13041.5 | PPR_2 | 337 | 385 |
| PF01535.19 | PPR | 412 | 436 |
| PF14432.5 | DYW_deaminase | 511 | 637 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.