Annotation of co-expression genes

PH01000112G0980's details annotation

1.Annotation

ICBR annotation: HEAT repeat family protein, putative, expressed

Blast result AT2G40730 : 0.00E+00
Blast annotation: Protein kinase family protein with ARM repeat domain

2.Location

Scaffold: PH01000112
Strand: -

RegionStartEnd
gene724038731400
mRNA724038731400
exon724038724951
exon725005725094
exon725184725300
exon725416725526
exon725670725809
exon726034726079
exon726271726350
exon726810726918
exon727205727327
exon728297728409
exon729155729296
exon729684729782
exon730575731400
CDS724895724951
CDS725005725094
CDS725184725300
CDS725416725526
CDS725670725809
CDS726034726079
CDS726271726350
CDS726810726918
CDS727205727327
CDS728297728409
CDS729155729296
CDS729684729782
CDS730575730700

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000492SCY1_SCYL1 (from iTAK)
RLK-Pelle_RLCK-IXb (from iTAK)
SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
protein binding,
protein phosphatase type 2A complex,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase67259

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0005488binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.