PH01000113G0190's details annotation
1.Annotation
ICBR annotation: ribosomal L18p/L5e family protein, putative, expressed
Blast result AT1G14205 : 3.70E-44
Blast annotation: Ribosomal L18p/L5e family protein
2.Location
Scaffold: PH01000113
Strand: -
| Region | Start | End |
| gene | 135465 | 137508 |
| mRNA | 135465 | 137508 |
| exon | 135465 | 136357 |
| exon | 136448 | 136600 |
| exon | 136700 | 136803 |
| exon | 136921 | 137508 |
| CDS | 136202 | 136357 |
| CDS | 136448 | 136600 |
| CDS | 136700 | 136803 |
| CDS | 136921 | 137032 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00861.21 | Ribosomal_L18p | 58 | 170 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.