PH01000113G1280's details annotation
1.Annotation
ICBR annotation: adenylosuccinate synthetase, chloroplast precursor, putative, expressed
Blast result AT3G57610 : 0.00E+00
Blast annotation: adenylosuccinate synthase
2.Location
Scaffold: PH01000113
Strand: -
| Region | Start | End |
| gene | 830039 | 835680 |
| mRNA | 830039 | 835680 |
| exon | 830039 | 830245 |
| exon | 830518 | 830829 |
| exon | 830908 | 831600 |
| exon | 833977 | 834160 |
| exon | 834918 | 834954 |
| exon | 835299 | 835680 |
| CDS | 830075 | 830245 |
| CDS | 830518 | 830829 |
| CDS | 830908 | 831600 |
| CDS | 833977 | 834160 |
| CDS | 834918 | 834954 |
| CDS | 835299 | 835470 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000243 | Alanine,_aspartate_and_glutamate_metabolism adenylosuccinate synthase activity, purine nucleotide biosynthetic process, cytokinesis microtubule cytoskeleton organization, RNA-dependent DNA replication, Purine_metabolism |
| coexpression network | CFinderM001802 | Alanine,_aspartate_and_glutamate_metabolism cell wall biogenesis, purine nucleotide biosynthetic process, galactoside 2-alpha-L-fucosyltransferase activity, adenylosuccinate synthase activity, WRKY Transcription_Regulator(from PlantTFDB) RNA-dependent DNA replication, Purine_metabolism nucleosome assembly, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00709.20 | Adenylsucc_synt | 23 | 51 |
| PF00709.20 | Adenylsucc_synt | 130 | 520 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Purine metabolism | adenylosuccinate synthase [EC:6.3.4.4] | ko00230 | K01939 |
| 271 Alanine, aspartate and glutamate metabolism | adenylosuccinate synthase [EC:6.3.4.4] | K01939 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0003964 | RNA-directed DNA polymerase activity |
| GO:0004019 | adenylosuccinate synthase activity |
| GO:0005525 | GTP binding |
| GO:0005737 | cytoplasm |
| GO:0006164 | purine nucleotide biosynthetic process |
| GO:0006278 | RNA-dependent DNA replication |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.