PH01000114G1150's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G31410 : 2.20E-70
Blast annotation: Protein of unknown function (DUF1644)
2.Location
Scaffold: PH01000114
Strand: -
| Region | Start | End |
| gene | 777391 | 784335 |
| mRNA | 777391 | 784335 |
| exon | 777391 | 777650 |
| exon | 778348 | 778534 |
| exon | 780114 | 784335 |
| CDS | 777498 | 777650 |
| CDS | 778348 | 778534 |
| CDS | 780114 | 781042 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000404 | Valine,_leucine_and_isoleucine_degradation Benzoate_degradation RWP-RK Transcription_Regulator(from iTAK) Nin-like Transcription_Regulator(from PlantTFDB) Biosynthesis_of_unsaturated_fatty_acids alpha-Linolenic_acid_metabolism Fatty_acid_metabolism Peroxisome G2-like Transcription_Regulator(from PlantTFDB) GARP-G2-like Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07800.11 | DUF1644 | 29 | 188 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.