PH01000117G0110's details annotation
1.Annotation
ICBR annotation: AP2 domain containing protein, expressed
Blast result AT1G52630 : 4.00E-143
Blast annotation: O-fucosyltransferase family protein
2.Location
Scaffold: PH01000117
Strand: -
| Region | Start | End |
| gene | 50537 | 63184 |
| mRNA | 50537 | 63184 |
| exon | 50537 | 51717 |
| exon | 51820 | 52081 |
| exon | 54462 | 54585 |
| exon | 54976 | 55060 |
| exon | 55242 | 55963 |
| exon | 62071 | 62292 |
| exon | 62395 | 62483 |
| exon | 62642 | 62660 |
| exon | 62933 | 63184 |
| CDS | 51704 | 51717 |
| CDS | 51820 | 52081 |
| CDS | 54462 | 54585 |
| CDS | 54976 | 55060 |
| CDS | 55242 | 55963 |
| CDS | 62071 | 62292 |
| CDS | 62395 | 62483 |
| CDS | 62642 | 62660 |
| CDS | 62933 | 63066 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000795 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GTnc |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10250.8 | O-FucT | 52 | 343 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.