PH01000117G0850's details annotation
1.Annotation
ICBR annotation: ribosomal protein L7Ae, putative, expressed
Blast result AT3G62870 : 5.00E-112
Blast annotation: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
2.Location
Scaffold: PH01000117
Strand: +
| Region | Start | End |
| gene | 633366 | 637244 |
| mRNA | 633366 | 637244 |
| exon | 633366 | 633477 |
| exon | 633719 | 633766 |
| exon | 633865 | 634066 |
| exon | 635637 | 635806 |
| exon | 635925 | 636053 |
| exon | 636124 | 636216 |
| exon | 636301 | 637244 |
| CDS | 633475 | 633477 |
| CDS | 633719 | 633766 |
| CDS | 633865 | 634066 |
| CDS | 635637 | 635806 |
| CDS | 635925 | 636053 |
| CDS | 636124 | 636216 |
| CDS | 636301 | 636432 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001837 | Ribosome ribosome biogenesis, ribonucleoprotein complex, large ribosomal subunit, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01248.25 | Ribosomal_L7Ae | 115 | 205 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L7Ae | ko03011 | K02936 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0030529 | ribonucleoprotein complex |
| GO:0042254 | ribosome biogenesis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.